Auster, P.J. and J.S. Link. 2009. Compensation and recovery of feeding guilds in a northwest Atlantic shelf fish community. Marine Ecology Progress Series 382:163-172.
Auster, P.J., J. Godfrey, A. Watson, A. Paquette and G. McFall. 2009. Behavior of prey links midwater and demersal piscivorous reef fishes. Neotropical Icthyology 7:109-112.
Moore, J.A. and P.J. Auster. In press. Commensalism between juvenile cusk eels and pancake urchins on western North Atlantic seamounts. Bulletin of the Peabody Museum of Natural History.
Auster, P.J. and J. Lindholm. In press. Variation in social foraging by fishes across a coral reef landscape. Proceedings of the 11th International Coral Reef Symposium.
Auster, P.J., R. Fujita, S.R. Kellert, J. Avise, C. Campagna, B. Cuker, P. Dayton, B. Heneman, R. Kenchington, G. Stone, G. Notarbartolo di Sciara and P. Glynn. 2008. Developing an ocean ethic: science, utility, aesthetics, self-interest and different ways of knowing. Conservation Biology 23:233-235.
Auster, P.J. 2008. Predation strategies of Atlantic trumpetfish in midwater. Neotropical Ichthyology 6:289-292.
Stoner, A.W., C.H. Ryer, S.J. Parker, P.J. Auster and W.W. Wakefield. 2008. Evaluating the role of fish behavior in surveys conducted with underwater vehicles. Canadian Journal of Fisheries and Aquatic Sciences 65:1230-1243.
Auster, P.J. 2008. Variation in search and predatory attack behaviors of shark mackerel Grammatorcynus bicarinatus. Journal of the Marine Biological Association of the United Kingdom 88:847-849.
Moore, J., P. Auster, D. Calini, K. Heinonen, K. Barber and B. Hecker. 2008. The false boarfish Neocyttus helgae in the western North Atlantic. Bulletin of the Peabody Museum of Natural History 49:31-41.
Auster, P., J. Lindholm, M. Plourde, K. Barber and H. Singh. 2007. Camera configuration and use of AUVs to census mobile fauna. Marine Technology Society Journal 41(3):15-18.
Waller, R., L. Watling, P. Auster and T. Shank. 2007. Anthropogenic impacts on the Corner Rise Seamounts, NW Atlantic Ocean. Journal of the Marine Biological Association of the United Kingdom. 87:1075-1076.
Auster, P.J. 2007. Linking deepwater corals and fish populations. Bulletin of Marine Science 81(Supplement 1):93-99.
Lindholm, J., P.J. Auster, and A. Knight. 2007. Site fidelity and movement of Atlantic cod (Gadus morhua) at deep boulder reefs in the western Gulf of Maine. Marine Ecology Progress Series. 342: 239–247.
Cook, R. and P. Auster. 2007. A bioregional classification for the continental shelf of northeastern North America for conservation analysis and planning based on representation. Marine Sanctuaries Conservation Series NMSP-07-03. U.S. Department of Commerce, National Oceanic and Atmospheric Administration, Office of National Marine Sanctuaries, Silver Spring, MD. 14 pp.
Auster, P.J., R. Clark and R.E.S. Reed. 2006. Chapter 3. Marine fishes. p. 89-229 in: An Ecological Characterization of the Stellwagen Bank National Marine Sanctuary Region: Oceanographic, Biogeographic, and Contaminants Assessment. National Center for Coastal Ocean Science, NOAA, Silver Spring, Maryland. NOAA Technical Memorandum NOS NCCOS 45.
Cook, R. and P. Auster. 2006. Developing alternatives for optimal representation of seafloor habitats and associated communities in Stellwagen Bank National Marine Sanctuary. Marine Sanctuaries Conservation Series ONMS-06-02. U.S. Department of Commerce, National Oceanic and Atmospheric Administration, Office of National Marine Sanctuaries, Silver Spring, MD. 24 pp.
Auster, P.J. and K. Barber. 2006. Atlantic hagfish exploit prey captured by other taxa. Journal of Fish Biology. 68:618-621.
Auster, P.J., B. Semmens, and K. Barber. 2005. Pattern in the co-occurrences of fishes inhabiting the coral reefs of Bonaire, Netherlands Antilles. Environmental Biology of Fishes. 74:187-194.
Link, J., F. Almeida, P. Valentine, P. Auster, R. Reid, and J. Vitalano. 2005. The effects of area closures on Georges Bank. American Fisheries Society Symposium. 41:345-368.
Cook, R.R. and P.J. Auster. 2005. Use of simulated annealing for identifying essential fish habitat in a multi-species context. Conservation Biology 19:876-886.
Auster, P.J. 2005. Are deep-water corals important habitats for fishes? p. 747-760. In: A. Freiwald and J.M. Roberts (eds.) Cold-water Corals and Ecosystems, Springer-Verlag, Berlin Heidelberg.
Watling, L. and P.J. Auster. 2005. Distribution of deepwater alcyonacea off the northeast coast of the United States. p. 279-296. In: A. Freiwald and J.M. Roberts (eds.) Cold-water Corals and Ecosystems, Springer-Verlag, Berlin Heidelberg.
Auster, P.J., J. Moore, K. Heinonen, and L. Watling. 2005. A habitat classification scheme for seamount landscapes: assessing the functional role of deepwater corals as fish habitat. p. 761-769. In: A. Freiwald and J.M. Roberts (eds.) Cold-water Corals and Ecosystems, Springer-Verlag, Berlin Heidelberg.
Lindholm, J., P. Auster, and P. Valentine. 2004. Role of a large marine protected area for conserving landscape attributes of sand habitats on Georges Bank (Northwest Atlantic). Marine Ecology Progress Series 269:61-68.
Auster, P.J., J. Lindholm, and P.C. Valentine. 2003. Variation in habitat use by juvenile Acadian redfish, Sebastes fasciatus. Environmental Biology of Fishes 68:381-389.
Auster, P.J., J. Lindholm, S. Schaub, G. Funnell, L.S. Kaufman, and P.C. Valentine. 2003. Use of sand wave habitats by silver hake. Journal of Fish Biology 62:143-152.
Lindholm, J. and P. Auster. 2003. Site utilization by Atlantic cod (Gadus morhua) in offshore gravel habitat as determined by acoustic telemetry: implications for the design of marine reserves. Marine Technology Society Journal 37(1):27-34.
Auster, P.J. 2002. Representation of biological diversity of the Gulf of Maine region at Stellwagen Bank National Marine Sanctuary (Northwest Atlantic): patterns of fish diversity and assemblage composition. p. 1096-1125. Managing Protected Areas in a Changing World. S. Bondrup-Nielson et al. (eds.). Science and Management of Protected Areas Association, Wolfville, Nova Scotia.
NRC. 2002. Effects of Trawling and Dredging on Seafloor Habitat. National Research Council, National Academy Press, Washington, D.C. (co-author with 11 other panel members)
Auster, P.J. and J. Lindholm. 2002. Pattern in the local diversity of coral reef fishes versus rates of social foraging. Caribbean Journal of Science 38:263-266.
Lindholm, J.B., P.J. Auster, M. Ruth, and L. Kaufman. 2001. Juvenile fish responses to variations in seafloor habitats: modeling the effects of fishing and implications for the design of marine protected areas.Conservation Biology 15:424-437.
Auster, P.J., K. Joy, and P.C. Valentine. 2001. Fish species and community distributions as proxies for seafloor habitat distributions: the Stellwagen Bank National Marine Sanctuary example (Northwest Atlantic, Gulf of Maine). Environmental Biology of Fishes 60:331-346.
Auster, P.J. 2001. Defining thresholds for precautionary habitat management actions in a fisheries context.North American Journal of Fisheries Management 21:1-9.
Auster, P.J. and N.L. Shackell. 2000. Marine protected areas for the temperate and boreal Northwest Atlantic: the potential for sustainable fisheries and conservation of biodiversity. Northeastern Naturalist7:419-434.
Auster, P.J., and R.W. Langton. 1999. The effects of fishing on fish habitat. p. 150-187. In: L. Benaka (ed.).Fish Habitat: Essential Fish Habitat and Rehabilitation. American Fisheries Society, Bethesda, Maryland.
Lindholm, J., P.J. Auster, and L. Kaufman. 1999. Habitat mediated survivorship of 0-year Atlantic cod (Gadus morhua). Marine Ecology Progress Series 180:247-255.
Freese, L., P.J. Auster, J. Heifetz, and B.L. Wing. 1999. Effects of trawling on seafloor habitat and associated invertebrate taxa in the Gulf of Alaska. Marine Ecology Progress Series 182:119-126.
Moser, M.L., P.J. Auster and J.B. Bichy. 1998. Effects of mat morphology on large Sargassum-associated fishes: Observations from a remotely operated vehicle (ROV) and free-floating video camcorders.Environmental Biology of Fishes 51:391-398.